{"id":2332,"date":"2020-07-15T11:37:00","date_gmt":"2020-07-15T10:37:00","guid":{"rendered":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/?p=2332"},"modified":"2026-01-26T16:28:04","modified_gmt":"2026-01-26T16:28:04","slug":"haloprotac-meets-adprom","status":"publish","type":"post","link":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/2020\/07\/15\/haloprotac-meets-adprom\/","title":{"rendered":"HaloProtac meets AdProm!"},"content":{"rendered":"<p>Our collaboration with the Sapkota and Ganley Labs is now published in Cell Chemical Biology.<\/p>\n<p><strong>Highlights<\/strong><\/p>\n<ul>\n<li>Ligand (L)-inducible AdPROM consists of Halo conjugated to a target protein binder<\/li>\n<li>Target protein is degraded with HaloPROTAC in cells expressing L-AdPROM construct<\/li>\n<li>HaloPROTAC-mediated target protein degradation using L-AdPROM system is reversible<\/li>\n<li>Degradation using HaloPROTAC L-AdPROM impacts target protein biological functionRead the Article open access here.<\/li>\n<\/ul>\n<p><strong>Title<\/strong>: Inducible Degradation of Target Proteins through a Tractable Affinity-Directed Protein Missile System<\/p>\n<p><strong>Authors<\/strong>: Luke M Simpson, Thomas J Macartney, Alice Nardin, Luke J Fulcher, Sascha R\u00f6th, Andrea Testa, Chiara Maniaci, Alessio Ciulli, Ian G Ganley, Gopal P Sapkota<\/p>\n<p><strong>Summary<\/strong>:<\/p>\n<p>The affinity-directed protein missile (AdPROM) system utilizes specific polypeptide binders of intracellular proteins of interest (POIs) conjugated to an E3 ubiquitin ligase moiety to enable targeted proteolysis of the POI. However, a chemically tuneable AdPROM system is more desirable. Here, we use Halo-tag\/VHL-recruiting proteolysis-targeting chimera (HaloPROTAC) technology to develop a ligand-inducible AdPROM (L-AdPROM) system. When we express an L-AdPROM construct consisting of an anti-GFP nanobody conjugated to the Halo-tag, we achieve robust degradation of GFP-tagged POIs only upon treatment of cells with the HaloPROTAC. For GFP-tagged POIs, ULK1, FAM83D, and SGK3 were knocked in with a GFP-tag using CRISPR\/Cas9. By substituting the anti-GFP nanobody for a monobody that binds H- and K-RAS, we achieve robust degradation of unmodified endogenous RAS proteins only in the presence of the HaloPROTAC. Through substitution of the polypeptide binder, the highly versatile L-AdPROM system is useful for the inducible degradation of potentially any intracellular POI.<\/p>\n<p>Congratulations to our collaborators\u00a0Luke Simpson\u00a0and colleagues in the\u00a0<a href=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/sapkota-lab\/\">Sapkota Lab<\/a>\u00a0and\u00a0<a href=\"https:\/\/www.ppu.mrc.ac.uk\/research\/principal-investigator\/ian-ganley\">Ganley Lab<\/a>.\u00a0 We are happy to have contributed to this work with our own HaloProtac-E, home-made by\u00a0Andrea Testa\u00a0and\u00a0Chiara Maniaci. Read more\u00a0<a href=\"https:\/\/twitter.com\/alessiociulli\/status\/1283149437502726147\">on Twitter<\/a><\/p>\n<div id='gallery-1' class='gallery galleryid-2332 gallery-columns-3 gallery-size-large'><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon landscape'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/Grap-abstract.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"375\" height=\"375\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/Grap-abstract.jpg\" class=\"attachment-large size-large\" alt=\"\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/Grap-abstract.jpg 375w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/Grap-abstract-300x300.jpg 300w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/Grap-abstract-150x150.jpg 150w\" sizes=\"auto, (max-width: 375px) 100vw, 375px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon portrait'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"741\" height=\"1024\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1-741x1024.jpg\" class=\"attachment-large size-large\" alt=\"Figure 1. GFP-ULK1 and FAM83D-GFP Are Degraded with HaloPROTAC-E in Cells Expressing FLAG-aGFP6M-Halo\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1-741x1024.jpg 741w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1-217x300.jpg 217w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1-768x1062.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1-1111x1536.jpg 1111w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure1-1481x2048.jpg 1481w\" sizes=\"auto, (max-width: 741px) 100vw, 741px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon portrait'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"881\" height=\"1024\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2-881x1024.jpg\" class=\"attachment-large size-large\" alt=\"Figure 2. Characterization of HaloPROTAC-E L-AdPROM-Mediated GFP-ULK1 and FAM83D-GFP Degradation\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2-881x1024.jpg 881w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2-258x300.jpg 258w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2-768x893.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2-1321x1536.jpg 1321w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure2-1762x2048.jpg 1762w\" sizes=\"auto, (max-width: 881px) 100vw, 881px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon portrait'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"971\" height=\"1024\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3-971x1024.jpg\" class=\"attachment-large size-large\" alt=\"Figure 3. HaloPROTAC-E L-AdPROM-Mediated Degradation of SGK3-GFP Is Comparable to that with SGK3-PROTAC1\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3-971x1024.jpg 971w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3-284x300.jpg 284w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3-768x810.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3-1456x1536.jpg 1456w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure3-1942x2048.jpg 1942w\" sizes=\"auto, (max-width: 971px) 100vw, 971px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon landscape'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"926\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4-1024x926.jpg\" class=\"attachment-large size-large\" alt=\"Figure 4. HaloPROTAC-E L-AdPROM-mediated GFP-ULK1, FAM83D-GFP, and SGK3-GFP Degradation Is Reversible\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4-1024x926.jpg 1024w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4-300x271.jpg 300w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4-768x695.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4-1536x1389.jpg 1536w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure4-2048x1853.jpg 2048w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon portrait'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"753\" height=\"1024\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5-753x1024.jpg\" class=\"attachment-large size-large\" alt=\"Figure 5. HaloPROTAC-E L-AdPROM-mediated GFP-ULK1 Degradation Inhibits Starvation-Induced Autophagy\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5-753x1024.jpg 753w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5-221x300.jpg 221w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5-768x1044.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5-1130x1536.jpg 1130w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure5-1507x2048.jpg 1507w\" sizes=\"auto, (max-width: 753px) 100vw, 753px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon landscape'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"869\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6-1024x869.jpg\" class=\"attachment-large size-large\" alt=\"Figure 6. HaloPROTAC-E L-AdPROM-Mediated FAM83D-GFP Degradation Prevents CK1\u03b1 Recruitment to the Mitotic Spindle during Mitosis\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6-1024x869.jpg 1024w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6-300x255.jpg 300w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6-768x652.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6-1536x1304.jpg 1536w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure6-2048x1739.jpg 2048w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a>\n\t\t\t<\/div><\/figure><figure class='gallery-item'>\n\t\t\t<div class='gallery-icon portrait'>\n\t\t\t\t<a href='https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"776\" height=\"1024\" src=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7-776x1024.jpg\" class=\"attachment-large size-large\" alt=\"Figure 7. Untagged Endogenous RAS Proteins Are Degraded with HaloPROTAC-E in Cells Expressing FLAG-Halo-aHRAS\" srcset=\"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7-776x1024.jpg 776w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7-227x300.jpg 227w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7-768x1013.jpg 768w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7-1164x1536.jpg 1164w, https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-content\/uploads\/sites\/233\/2024\/01\/sapkota-ganley-lab-figure7-1552x2048.jpg 1552w\" sizes=\"auto, (max-width: 776px) 100vw, 776px\" \/><\/a>\n\t\t\t<\/div><\/figure>\n\t\t<\/div>\n\n","protected":false},"excerpt":{"rendered":"<p>Our collaboration with the Sapkota and Ganley Labs is now published in Cell Chemical Biology. Highlights Ligand (L)-inducible AdPROM consists of Halo conjugated to a target protein binder Target protein is degraded with HaloPROTAC in cells expressing L-AdPROM construct HaloPROTAC-mediated target protein degradation using L-AdPROM system is reversible Degradation using HaloPROTAC L-AdPROM impacts target protein [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[15,4],"tags":[],"class_list":["post-2332","post","type-post","status-publish","format-standard","hentry","category-15","category-news"],"blocksy_meta":[],"_links":{"self":[{"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/posts\/2332","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/comments?post=2332"}],"version-history":[{"count":2,"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/posts\/2332\/revisions"}],"predecessor-version":[{"id":4856,"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/posts\/2332\/revisions\/4856"}],"wp:attachment":[{"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/media?parent=2332"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/categories?post=2332"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/sites.dundee.ac.uk\/alessio-ciulli\/wp-json\/wp\/v2\/tags?post=2332"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}